DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6937 and HRP1

DIOPT Version :10

Sequence 1:NP_651066.2 Gene:CG6937 / 42662 FlyBaseID:FBgn0038989 Length:356 Species:Drosophila melanogaster
Sequence 2:NP_014518.1 Gene:HRP1 / 853997 SGDID:S000005483 Length:534 Species:Saccharomyces cerevisiae


Alignment Length:397 Identity:67/397 - (16%)
Similarity:126/397 - (31%) Gaps:144/397 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 QKIEKQSTPKKPIDAAKNVVSGQLKKKVTKARPQKPKGPERGVVIVKHLPHGFFEQQLRQYFRQF 74
            |:...||.|::.:.        |.|::.:||...|    |...:.:..|.....|..||:||.::
Yeast   130 QQPSSQSPPQQQVT--------QTKEERSKADLSK----ESCKMFIGGLNWDTTEDNLREYFGKY 182

  Fly    75 GRVLRVRLARSLRTGNSKGYAFVEFEYPEVAKVAADTMDNYLMFQKVVKATYIPPE--------- 130
            |.|..:::.:...||.|:|:.|:.||.|       .::|..:..|.::....|.|:         
Yeast   183 GTVTDLKIMKDPATGRSRGFGFLSFEKP-------SSVDEVVKTQHILDGKVIDPKRAIPRDEQD 240

  Fly   131 ----------------KQTLNFF-----------------------------------RTSLKKV 144
                            |:...||                                   |....|.
Yeast   241 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKF 305

  Fly   145 VNKAGKEIYVSDLTKATQRSVKKQ----------NNWDESACQKRTVANLNKI------------ 187
            ::...::|   ::.:|..|.::::          ||.:..........:.|::            
Yeast   306 IDFKDRKI---EIKRAEPRHMQQKSSNNGGNNGGNNMNRRGGNFGNQGDFNQMYQNPMMGGYNPM 367

  Fly   188 ----------KKLQEKY----KDLGIDFSNLLVEPVKKAA----GSAEASTSQAAAKKAGKKQKT 234
                      :|:||.|    |..|:|::.:..:.:::.|    |.|....:....:.......|
Yeast   368 MNPQAMTDYYQKMQEYYQQMQKQTGMDYTQMYQQQMQQMAMMMPGFAMPPNAMTLNQPQQDSNAT 432

  Fly   235 AAKKEPTLED--------LLGNTINEDSDD------------EDYVDASDDESDLEAEEEQADSE 279
            .....|:..|        .:|||.|.||..            ..|.|  |..|......::.|.:
Yeast   433 QGSPAPSDSDNNKSNDVQTIGNTSNTDSGSPPLNLPNGPKGPSQYND--DHNSGYGYNRDRGDRD 495

  Fly   280 QTSDDSD 286
            :...|.|
Yeast   496 RNDRDRD 502

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6937NP_651066.2 RRM_NIFK_like 52..125 CDD:409748 18/72 (25%)
RRN3 <242..>306 CDD:461623 14/65 (22%)
HRP1NP_014518.1 PABP-1234 <144..463 CDD:130689 56/332 (17%)
RRM1_Hrp1p 161..236 CDD:409991 20/81 (25%)
RRM2_Hrp1p 244..321 CDD:409767 7/79 (9%)

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