DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6937 and tardbpb

DIOPT Version :10

Sequence 1:NP_651066.2 Gene:CG6937 / 42662 FlyBaseID:FBgn0038989 Length:356 Species:Drosophila melanogaster
Sequence 2:NP_958884.1 Gene:tardbpb / 325052 ZFINID:ZDB-GENE-030131-3777 Length:412 Species:Danio rerio


Alignment Length:160 Identity:43/160 - (26%)
Similarity:70/160 - (43%) Gaps:28/160 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 VKKPKAQKIEKQSTPKKPIDAAKNVVSGQLKKKVTKARPQKPKGPERGVVIVKHLPHGFFEQQLR 68
            |..||...:.........|||:          ..||.:....|..:   :||..||....||.|:
Zfish    76 VNYPKETVLPDNKRKMDEIDAS----------SATKIKRGDQKTSD---LIVLGLPWKTSEQDLK 127

  Fly    69 QYFRQFGRVLRVRLARSLRTGNSKGYAFVEF-EYPEVAKVAADTMDNYLMFQK-VVKATY----I 127
            .||..||.|:.|::.|.::||||||:.||.| ::...:||         |.|: ::...:    :
Zfish   128 DYFGTFGEVIMVQVKRDVKTGNSKGFGFVRFGDWETQSKV---------MTQRHMIDGRWCDCKL 183

  Fly   128 PPEKQTLNFFRTSLKKVVNKAGKEIYVSDL 157
            |..||.::....|.|..|.:..:::...:|
Zfish   184 PNSKQGIDEPMRSRKVFVGRCTEDMTADEL 213

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6937NP_651066.2 RRM_NIFK_like 52..125 CDD:409748 27/74 (36%)
RRN3 <242..>306 CDD:461623
tardbpbNP_958884.1 TDP43_N 5..78 CDD:465833 1/1 (100%)
RRM1_TDP43 111..184 CDD:409760 27/84 (32%)
RRM2_TDP43 197..267 CDD:409761 3/17 (18%)
Blue background indicates that the domain is not in the aligned region.

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