DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6937 and tia1l

DIOPT Version :10

Sequence 1:NP_651066.2 Gene:CG6937 / 42662 FlyBaseID:FBgn0038989 Length:356 Species:Drosophila melanogaster
Sequence 2:NP_956476.1 Gene:tia1l / 323447 ZFINID:ZDB-GENE-030131-2167 Length:342 Species:Danio rerio


Alignment Length:175 Identity:37/175 - (21%)
Similarity:63/175 - (36%) Gaps:41/175 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 QKIEKQSTPKKPIDAAKNVVSGQLKKKVTKARPQKPKGPERGVVIVKHLPHGFFEQQLRQYFRQF 74
            ::|......:|| .|.|:...|...|.::.........|....|....:..|..:|.:||.|..|
Zfish   166 RQIRTNWATRKP-SAPKSNNEGASSKHLSYEEVLNQSSPSNCTVYCGGIASGLSDQLMRQTFSPF 229

  Fly    75 GRVLRVRLARSLRTGNSKGYAFVEFEYPEVAKVAADTMDNYLMFQKVVKATYIPPEKQTLNFFRT 139
            |:::.:|:.      ..|||:||.|:..|.|..|..:::...:....||..:             
Zfish   230 GQIMEIRVF------PEKGYSFVRFDSHEGAAHAIVSVNGTCIEGHTVKCYW------------- 275

  Fly   140 SLKKVVNKAGKEIYVSDLTKATQRSVKKQN----------NWDES 174
                     |||  .:|:....|..:.:||          .|.:|
Zfish   276 ---------GKE--TADMRSMQQMPMPQQNKPTYAAQPYGQWGQS 309

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6937NP_651066.2 RRM_NIFK_like 52..125 CDD:409748 20/72 (28%)
RRN3 <242..>306 CDD:461623
tia1lNP_956476.1 RRM_SF 10..83 CDD:473069
RRM2_TIA1_like 98..172 CDD:409789 1/5 (20%)
RRM3_TIAR 206..278 CDD:241064 21/99 (21%)
Blue background indicates that the domain is not in the aligned region.

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