DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG6937 and rbm-28

DIOPT Version :10

Sequence 1:NP_651066.2 Gene:CG6937 / 42662 FlyBaseID:FBgn0038989 Length:356 Species:Drosophila melanogaster
Sequence 2:NP_497077.2 Gene:rbm-28 / 175145 WormBaseID:WBGene00011043 Length:608 Species:Caenorhabditis elegans


Alignment Length:412 Identity:85/412 - (20%)
Similarity:155/412 - (37%) Gaps:117/412 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 PVKKPKAQKIEKQSTPKKPIDAAKNVVSGQLKKKVTKARPQKPKGPERGVVIVKHLPHGFFEQQL 67
            |.||||        .||..:...:::..|:                   ||.:::|.:...|:.:
 Worm   242 PAKKPK--------NPKAQLKTDESITEGK-------------------VVFLRNLSYDTKEELI 279

  Fly    68 RQYFRQFGRVLRVRLARSLRTGNSKGYAFVEFEYP-EVAKVAADTMDNYLMFQKVVKATYIPPEK 131
            ::...:||::....:.:...:|:|||.|||.|..| |.:.......|..::..::|||....|.|
 Worm   280 KEELSKFGKIDLAIICKYKDSGHSKGTAFVHFSTPIEASNCIEGVEDGVIIDNRLVKANLAIPRK 344

  Fly   132 QTLNFFRTSLKKVVN-----KAGKEIYVSDLTKATQRSVKKQNNWDESACQKRTVANLNKIKKLQ 191
            :..:..:..|.||..     :..:...:.|.|.|.....|     |::|.::|....:.  |||:
 Worm   345 EAADMEKEKLTKVPKDKRNLRLARFGLIRDGTAAAAGMSK-----DDAAKRERIAEAMR--KKLE 402

  Fly   192 EKYKDLGIDFSNLLVEPVK-------------KAAGSAEASTSQAAA---------KKA----GK 230
            .         :|:.:.||:             |....|:..||..|.         ||.    ||
 Worm   403 N---------TNMFISPVRLCIHNLPQKINDVKLKELAQKFTSPGALITECRVWMDKKRLTPDGK 458

  Fly   231 KQKT----AAKKE-----PTLEDLLGNTINEDSDDEDYVDASDDESDLEAEEEQA--DSEQTSDD 284
            .:.:    .|.||     ..|:.|..|......|....|:.|.:  :|.|.:.:|  :.:.|::.
 Worm   459 PKSSGFGFVAFKEHMHALECLKKLNNNAETFHKDHRPIVEFSVE--NLLALQARARRNVKNTTEK 521

  Fly   285 SDEEEDLSPPPKQKKTKLADKLKRKPG---TGG-----------VQKKKIAPPAKSNKNAATQKL 335
            ..|        :....|:..::|:..|   |.|           ::.:.::..||.|.:      
 Worm   522 MSE--------RVVNEKIRQQVKQSIGEVHTAGMKFLPKFTGKKIRHRNLSGRAKKNVD------ 572

  Fly   336 QLAAAKSLAKP-LPKGKAKKSK 356
            ::.|||:..:| :|....||.|
 Worm   573 RVKAAKNSKQPEMPTSVGKKKK 594

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6937NP_651066.2 RRM_NIFK_like 52..125 CDD:409748 19/73 (26%)
RRN3 <242..>306 CDD:461623 12/65 (18%)
rbm-28NP_497077.2 RRM2_RBM28_like 96..173 CDD:409848
RRM3_RBM28_like 263..340 CDD:409849 20/95 (21%)
RRM4_RBM28_like 411..503 CDD:409850 19/93 (20%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.