DRSC/TRiP Functional Genomics Resources

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Protein Alignment CSN6 and stambpa

DIOPT Version :9

Sequence 1:NP_524451.1 Gene:CSN6 / 42661 FlyBaseID:FBgn0028837 Length:341 Species:Drosophila melanogaster
Sequence 2:NP_956792.1 Gene:stambpa / 797422 ZFINID:ZDB-GENE-040426-1551 Length:418 Species:Danio rerio


Alignment Length:149 Identity:40/149 - (26%)
Similarity:60/149 - (40%) Gaps:23/149 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 DMSAKPSTSSSAAAGSSMAVDKTA----DQNPQPQGNIMAAAGTSGSVTISLHPLVIMNISEHWT 69
            |:...|..|.|.....:.|.:...    |::.:|  ::..:||.|..|. .|..|.:.  :|...
Zfish   200 DVHGPPQASLSPQTPPAGATNHQGLPAFDRSLKP--SVPVSAGHSALVN-GLRQLFVP--AELCQ 259

  Fly    70 RF--RAQHGEPRQV--YGALIGKQKGRNIEIMNSFELKTDVIGDETVINKDY---YNKKEQQYKQ 127
            ||  .|:....|.|  .|.|.||.      :.|:|.: |.||..:.....||   .|::|....|
Zfish   260 RFLKLAETNTARAVETCGILCGKL------MKNAFTV-THVIVPKQCGGPDYCDTENEEELFLIQ 317

  Fly   128 VFSDLDFIGWYTTGDNPTA 146
            ..:||..:||..|....||
Zfish   318 DQNDLITLGWIHTHPTQTA 336

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CSN6NP_524451.1 MPN_CSN6 52..335 CDD:163694 30/102 (29%)
stambpaNP_956792.1 USP8_dimer 13..114 CDD:286108
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 199..218 4/17 (24%)
MPN_AMSH_like 248..418 CDD:163697 29/98 (30%)
JAMM motif. /evidence=ECO:0000255|PROSITE-ProRule:PRU01182 329..342 3/8 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1310
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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