DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sit and elo-4

DIOPT Version :9

Sequence 1:NP_651063.1 Gene:sit / 42658 FlyBaseID:FBgn0038986 Length:295 Species:Drosophila melanogaster
Sequence 2:NP_499056.1 Gene:elo-4 / 183367 WormBaseID:WBGene00001242 Length:291 Species:Caenorhabditis elegans


Alignment Length:285 Identity:81/285 - (28%)
Similarity:126/285 - (44%) Gaps:65/285 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 YWNFLFTDLADPRTNDWFLIKSPLPLLGILAFYLFFVLSWGPKFMKDRKPFKLERTLLVYNFFQV 75
            ||..||...       |:...:    :.:|.|.|..|:.   |||::||||.|:..|:::|....
 Worm    43 YWTILFQKY-------WYHSIT----ISVLYFILIKVIQ---KFMENRKPFTLKYPLILWNGALA 93

  Fly    76 ALSV------------WMVYEGVVIWQYYSWRCQPVD----WSRTPKAYREARVVYVYYLAKITE 124
            |.|:            .:..||  .::...:.|.|.|    ||            :.:.|:||.|
 Worm    94 AFSIIATLRFSIDPLRSLYAEG--FYKTLCYSCNPTDVAAFWS------------FAFALSKIVE 144

  Fly   125 LLDTIFFVLRKNDRQVTFLHVYHHTVMPMISWGTSKYYPGGHGTFIGWINSFVHIIMYSYYFLSA 189
            |.||:|.:|||  |.:.|||.|||..:.:.:..:...:... |.|...:|.|.|.:||:||.:||
 Worm   145 LGDTMFIILRK--RPLIFLHYYHHAAVLIYTVHSGAEHTAA-GRFYILMNYFAHSLMYTYYTVSA 206

  Fly   190 FGPQMQKYLWWKKYITNLQMIQFCCAFIHQTQLLY---TDCGYP-RWSV-----CFTLPNAVFFY 245
            .|.::.|  |....:|.:|..|. .|.:..|.::|   |:...| :.||     .|.:  .|.|.
 Worm   207 MGYRLPK--WVSMTVTTVQTTQM-LAGVGITWMVYKVKTEYKLPCQQSVANLYLAFVI--YVTFA 266

  Fly   246 FLFNDFYQKSY----KKKQAAAKEK 266
            .||..|:.|:|    .||..:.|.:
 Worm   267 ILFIQFFVKAYIIKSSKKSKSVKNE 291

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sitNP_651063.1 ELO 28..252 CDD:279492 70/248 (28%)
elo-4NP_499056.1 ELO 48..278 CDD:279492 74/265 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3071
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1094172at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X54
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.820

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