DRSC/TRiP Functional Genomics Resources

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Protein Alignment Octbeta1R and Htr1d

DIOPT Version :10

Sequence 1:NP_651057.1 Gene:Octbeta1R / 42652 FlyBaseID:FBgn0038980 Length:508 Species:Drosophila melanogaster
Sequence 2:NP_036984.1 Gene:Htr1d / 25323 RGDID:2847 Length:374 Species:Rattus norvegicus


Alignment Length:377 Identity:122/377 - (32%)
Similarity:185/377 - (49%) Gaps:60/377 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    89 QASEGSTDDADGSS---------------HLALVFVKCFIIGFIILAAILGNMLVIVSVMRHRKL 138
            |:.||...:|...|               .::||.|    :..|.||.:|.|..|:.:::..:||
  Rat     6 QSLEGLPQEASNRSLNATGAWDPEVLQALRISLVVV----LSIITLATVLSNAFVLTTILLTKKL 66

  Fly   139 RIITNYFVVSLAVADMLVALCAMTFNASVMISGKWMFGSVMCDMWNSFDVYFSTASIMHLCCISV 203
            ....||.:.|||..|:||::..|..:.:...:..|.||.::||:|.|.|:...||||:|||.|::
  Rat    67 HTPANYLIGSLATTDLLVSILVMPISIAYTTTRTWNFGQILCDIWVSSDITCCTASILHLCVIAL 131

  Fly   204 DRYYAIVQPLDYPLIMTQRRVFIMLLMVWLSPALLSFLPICSGWYTTTENYKYLKSNPHICEFKV 268
            |||:||...|:|....|......|:..||.....:|..|:.  |...|       ::..:.:..|
  Rat   132 DRYWAITDALEYSKRRTAGHAAAMIAAVWAISICISIPPLF--WRQAT-------AHEEMSDCLV 187

  Fly   269 NK---AYAIVSSSMSFWIPGIVMLSMYYRIYQEADRQ--------------ERLVYRSKVAAL-- 314
            |.   :|.|.|:..:|:||.|:::.:|.|||..|..:              .:|:..|..::|  
  Rat   188 NTSQISYTIYSTCGAFYIPSILLIILYGRIYVAARSRILNPPSLYGKRFTTAQLITGSAGSSLCS 252

  Fly   315 ----LLEKH-------LQISQIPKPRPSIQVEQSTISTMRRERKAARTLGIIMSAFLICWLPFFL 368
                |.|.|       |..:|:........:|:..||. .|||||.:|||||:.||:|||||||:
  Rat   253 LNPSLHESHTHTVGSPLFFNQVKIKLADSILERKRISA-ARERKATKTLGIILGAFIICWLPFFV 316

  Fly   369 WYIVSSLC-DSCITPRLLVGILFWIGYFNSALNPIIYAYFNRDFRAAFKKTL 419
            ..:|..:| |||.....|.....|:||.||.:||:||..||.|||.||::.:
  Rat   317 VSLVLPICRDSCWIHPALFDFFTWLGYLNSLINPVIYTVFNEDFRQAFQRVV 368

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Octbeta1RNP_651057.1 7tmA_DmOct-betaAR-like 109..415 CDD:320194 113/336 (34%)
TM helix 1 109..135 CDD:320194 7/25 (28%)
TM helix 2 142..168 CDD:320194 9/25 (36%)
TM helix 3 180..210 CDD:320194 17/29 (59%)
TM helix 4 222..245 CDD:320194 5/22 (23%)
TM helix 5 269..298 CDD:320194 12/31 (39%)
TM helix 6 343..373 CDD:320194 19/29 (66%)
TM helix 7 383..408 CDD:320194 10/24 (42%)
Htr1dNP_036984.1 7tmA_5-HT1B_1D 32..364 CDD:320455 115/345 (33%)
TM helix 1 37..63 CDD:320455 9/29 (31%)
TM helix 2 70..96 CDD:320455 9/25 (36%)
TM helix 3 108..138 CDD:320455 17/29 (59%)
DRY motif, important for ligand-induced conformation changes. /evidence=ECO:0000250|UniProtKB:P41595 132..134 1/1 (100%)
TM helix 4 150..173 CDD:320455 5/24 (21%)
TM helix 5 191..220 CDD:320455 11/28 (39%)
TM helix 6 291..321 CDD:320455 19/29 (66%)
TM helix 7 332..357 CDD:320455 10/24 (42%)
NPxxY motif, important for ligand-induced conformation changes and signaling. /evidence=ECO:0000250|UniProtKB:P41595 349..353 2/3 (67%)

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