DRSC/TRiP Functional Genomics Resources

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Protein Alignment Octbeta1R and pcdr-1

DIOPT Version :9

Sequence 1:NP_001262843.1 Gene:Octbeta1R / 42652 FlyBaseID:FBgn0038980 Length:508 Species:Drosophila melanogaster
Sequence 2:NP_510580.1 Gene:pcdr-1 / 181656 WormBaseID:WBGene00010329 Length:318 Species:Caenorhabditis elegans


Alignment Length:342 Identity:68/342 - (19%)
Similarity:132/342 - (38%) Gaps:65/342 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   117 IILAAILGNMLVIVSVMR------HRKLRIITNYFVVSLAVADMLVALCAMTFNASVMISGKWMF 175
            :|||..|  :|.:.|::.      ...|..:...:::||:|||:|.|:..:..:....:.|.|..
 Worm    20 LILAVDL--LLFVTSILNITVIAFTPDLSDVIGCYLISLSVADLLTAIFVIPLSIYSTLEGNWRI 82

  Fly   176 G---SVMCDMWNSFDVYFSTASIMHLCCISVDRYYAIVQPLDY-PLIMTQRRVFIMLLMVWLSPA 236
            |   |::|.......:....:::.....|.:|||.|:::|..| ...:|:.:.:|  :..||:..
 Worm    83 GGDNSIICKSAAYLQIALFCSTVYTFAWICIDRYSAMMKPSRYSEQSLTRCKCWI--VFSWLTSM 145

  Fly   237 LLSFLPICSGWYTTTENYKYLKSNPHICEFKVNKAYAIVSSSMSFWIPGIV-MLSMYYRIYQEAD 300
            ||    .|.......:...|..:...:.::....||::....:.| :|.:| :.:..::|:.   
 Worm   146 LL----CCPIIVARMQVVFYPDAQLCVLDWSATSAYSVTLLLLVF-VPTLVTVFNTGWKIWS--- 202

  Fly   301 RQERLVYRSKVAALLLEKHLQISQIPKPRPSIQVEQSTISTMRRERKAARTLGIIMSAFLICWLP 365
                 ..|:..|       |..||    |..::.:.:.:.|           |.:...|.:.|||
 Worm   203 -----AMRNPAA-------LDDSQ----RMLVETDPNFVLT-----------GFLFVTFFLSWLP 240

  Fly   366 FFLWYIVSSLCDSCITP-----RLLVGILFWIGYFNSALNPIIYAYFNRDFRAAFKKTLKSLFPY 425
            .    |...:|:....|     .:|.....|:.........:||.:.|..||.:|      |...
 Worm   241 L----ITLKVCELIWGPFDMDLSMLTFFFVWLAVSGPCCKFLIYMFTNHQFRRSF------LSYI 295

  Fly   426 AFYFCRRGRGRDDDRDL 442
            :...|...|.|.:..|:
 Worm   296 SCSMCCSSRSRYEYHDI 312

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Octbeta1RNP_001262843.1 7tm_4 112..>231 CDD:304433 28/123 (23%)
7tm_1 124..404 CDD:278431 53/295 (18%)
pcdr-1NP_510580.1 7tm_classA_rhodopsin-like 17..284 CDD:381740 59/306 (19%)
TM helix 1 17..41 CDD:381740 6/22 (27%)
TM helix 2 50..72 CDD:381740 7/21 (33%)
TM helix 3 91..113 CDD:381740 1/21 (5%)
TM helix 4 135..151 CDD:381740 6/21 (29%)
TM helix 5 175..198 CDD:381740 5/23 (22%)
TM helix 6 224..246 CDD:381740 7/36 (19%)
TM helix 7 259..284 CDD:381740 4/24 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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