DRSC/TRiP Functional Genomics Resources

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Protein Alignment Octbeta1R and ser-7

DIOPT Version :9

Sequence 1:NP_001262843.1 Gene:Octbeta1R / 42652 FlyBaseID:FBgn0038980 Length:508 Species:Drosophila melanogaster
Sequence 2:NP_741730.1 Gene:ser-7 / 180565 WormBaseID:WBGene00004780 Length:435 Species:Caenorhabditis elegans


Alignment Length:432 Identity:131/432 - (30%)
Similarity:197/432 - (45%) Gaps:94/432 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 QAQDIQASEGSTDDADGSSHLALVFVKCFIIGFIILAAILGNMLVIVSVMRHRKLRIITNYFVVS 148
            :|..:|.:..:|    |.:.||:.     |:..||:..: ||.||.::|:..|||:...|:.:||
 Worm    28 KADRVQLASFTT----GKALLAIA-----ILAMIIMTTV-GNALVCLAVLLVRKLKHPQNFLLVS 82

  Fly   149 LAVADMLVALCAMTFNASVMISGKWMFGSVMCDMWNSFDVYFSTASIMHLCCISVDRYYAIVQPL 213
            |||||..|.|..|......::..||..||.||.::.:.|:...||||::||.||||||..|..||
 Worm    83 LAVADFFVGLVVMPLALIDLLFDKWPLGSTMCSVYTTSDLTLCTASIVNLCAISVDRYLVISSPL 147

  Fly   214 DYPLIMTQRRVFIMLLMVWLSPALLSFLP------ICSGWYTTTENYKYLKSNPHICEFKVNKAY 272
            .|....|.:|:.:.:..||:..|::|...      :..|.|  .::....:..||.    :.::|
 Worm   148 RYSAKRTTKRIMMYIACVWIIAAIVSISSHIIANLLNDGTY--VDDTGTCQVIPHF----IYQSY 206

  Fly   273 AIVSSSMSFWIPGIVMLSMYYRIYQEADR---QERLVYR--------------SKVAALLLEKHL 320
            |.:   :||:.|..:|:.:..:|::.|.|   |:||:..              ::....|.||  
 Worm   207 ATI---ISFYAPTFIMVILNIKIWRAAKRLAAQDRLMSHCNSVDASERPRNGSAETKDFLNEK-- 266

  Fly   321 QISQIPKP-------------------RPSI-----------QVEQSTISTMRRERKAARTLGII 355
            :...:||.                   |||.           |.|:|       |.||.:|||:|
 Worm   267 ETIDVPKKERANSTNSRLFKLERKYLHRPSAFFSAAKGPLIRQTEKS-------ECKARKTLGVI 324

  Fly   356 MSAFLICWLPFFLWYIVSSLCDSCITPRLLVGILFWIGYFNSALNPIIYAYFNRDFRAAFKKTLK 420
            ||.|:|||||||:..|..|.  ....|..|..:..|:||.||.|||:||..:|::||..|::.|.
 Worm   325 MSVFIICWLPFFILAIFKSF--GMWIPDWLDLLALWLGYSNSTLNPLIYCKYNKEFRIPFREMLA 387

  Fly   421 SLFPYAFYFCRRGRGRDDDRDLEFGGPSRRGTNGAQRTGSGS 462
                     ||....:...|...|  .||.|.....||.|.|
 Worm   388 ---------CRCATLQTVMRQQSF--TSRYGPPVRYRTQSSS 418

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Octbeta1RNP_001262843.1 7tm_4 112..>231 CDD:304433 47/118 (40%)
7tm_1 124..404 CDD:278431 104/332 (31%)
ser-7NP_741730.1 7tmA_5-HT7 42..382 CDD:320452 114/365 (31%)
TM helix 1 44..68 CDD:320452 10/29 (34%)
TM helix 2 77..99 CDD:320452 11/21 (52%)
TM helix 3 115..137 CDD:320452 8/21 (38%)
TM helix 4 160..176 CDD:320452 4/15 (27%)
TM helix 5 201..224 CDD:320452 6/29 (21%)
TM helix 6 315..340 CDD:320452 16/24 (67%)
TM helix 7 350..375 CDD:320452 11/24 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S5266
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.860

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