DRSC/TRiP Functional Genomics Resources

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Protein Alignment Octbeta1R and Htr4

DIOPT Version :9

Sequence 1:NP_001262843.1 Gene:Octbeta1R / 42652 FlyBaseID:FBgn0038980 Length:508 Species:Drosophila melanogaster
Sequence 2:NP_032339.2 Gene:Htr4 / 15562 MGIID:109246 Length:388 Species:Mus musculus


Alignment Length:331 Identity:141/331 - (42%)
Similarity:190/331 - (57%) Gaps:24/331 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    97 DADGSSHLALVFV-KCFIIGF---IILAAILGNMLVIVSVMRHRKLR-IITNYFVVSLAVADMLV 156
            ||:.||:.....| |..::.|   :||.|||||:||:|:|.|.|:|| |.||||:||||.||:||
Mouse     5 DANVSSNEGFRSVEKVVLLTFLAVVILMAILGNLLVMVAVCRDRQLRKIKTNYFIVSLAFADLLV 69

  Fly   157 ALCAMTFNASVMISGKWMFGSVMCDMWNSFDVYFSTASIMHLCCISVDRYYAI-VQPLDYPLIMT 220
            ::..|.|.|..::...|.:|.:.|.:..|.||..:||||.||||||:|||||| .|||.|...||
Mouse    70 SVLVMPFGAIELVQDIWAYGEMFCLVRTSLDVLLTTASIFHLCCISLDRYYAICCQPLVYRNKMT 134

  Fly   221 QRRVFIMLLMVWLSPALLSFLPICSGW-----YTTTENYKYL-KSNPHICEFKVNKAYAIVSSSM 279
            ..|:.:||...|:.|..:|||||..||     ....|..|:. .||...|.|.|||.|||..|.:
Mouse   135 PLRIALMLGGCWVLPMFISFLPIMQGWNNIGIVDVIEKRKFSHNSNSTWCVFMVNKPYAITCSVV 199

  Fly   280 SFWIPGIVMLSMYYRIYQEADRQERLVYRSKVAALLLEKHLQISQIPKPRPSIQVEQSTISTMRR 344
            :|:||.::|:..|||||..|....:.:...:.|....|.        :|:|:   :|.:...||.
Mouse   200 AFYIPFLLMVLAYYRIYVTAKEHAQQIQMLQRAGATSES--------RPQPA---DQHSTHRMRT 253

  Fly   345 ERKAARTLGIIMSAFLICWLPFFLWYIVSSLCDSCITPRLLVGILFWIGYFNSALNPIIYAYFNR 409
            |.|||:||.:||..|..||.|||:..||....|..:..::....| |:||.||.|||.:||:.|:
Mouse   254 ETKAAKTLCVIMGCFCFCWAPFFVTNIVDPFIDYTVPEQVWTAFL-WLGYINSGLNPFLYAFLNK 317

  Fly   410 DFRAAF 415
            .||.||
Mouse   318 SFRRAF 323

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Octbeta1RNP_001262843.1 7tm_4 112..>231 CDD:304433 63/123 (51%)
7tm_1 124..404 CDD:278431 122/287 (43%)
Htr4NP_032339.2 7tmA_5-HT4 20..323 CDD:320184 133/314 (42%)
TM helix 1 21..47 CDD:320184 12/25 (48%)
TM helix 2 55..81 CDD:320184 15/25 (60%)
TM helix 3 93..123 CDD:320184 19/29 (66%)
TM helix 4 136..159 CDD:320184 10/22 (45%)
TM helix 5 189..218 CDD:320184 15/28 (54%)
TM helix 6 252..282 CDD:320184 16/29 (55%)
TM helix 7 291..316 CDD:320184 11/25 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H20243
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0005484
OrthoInspector 1 1.000 - - otm42843
orthoMCL 1 0.900 - - OOG6_107218
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4996
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
87.840

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