DRSC/TRiP Functional Genomics Resources

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Protein Alignment tHMG2 and AT1G55650

DIOPT Version :10

Sequence 1:NP_001163689.1 Gene:tHMG2 / 42651 FlyBaseID:FBgn0038979 Length:134 Species:Drosophila melanogaster
Sequence 2:NP_175961.1 Gene:AT1G55650 / 842014 AraportID:AT1G55650 Length:337 Species:Arabidopsis thaliana


Alignment Length:125 Identity:23/125 - (18%)
Similarity:55/125 - (44%) Gaps:11/125 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 PKKPMSAFMLWMNSTGRKNIRAEHPDFSVQEVS--VKGGEMWRAMADEHKIVWQESASKAMAEYK 71
            ||:..:.:..::.....: |:||:   :.|:||  ...|.||..:::..:.|:.|.:.:....||
plant   215 PKRQRTGYNFFVAEQSVR-IKAEN---AGQKVSSPKNFGNMWTNLSESDRKVYYEKSREDGKRYK 275

  Fly    72 EKLEKWNAFKEHQTESFPHIYEAPLSSRFSKTNQRPTLFVYDSKDEAMAPICRTCFSKAK 131
            .::.::.:..|.:........:|..|:..::|....:     .::.|....|.:..|.|:
plant   276 MEILQYRSLMESRVAEIVAATDAGTSASAAETADEAS-----QENLAKTDACTSASSAAE 330

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tHMG2NP_001163689.1 HMG-box_SSRP1-like 11..78 CDD:438810 13/68 (19%)
AT1G55650NP_175961.1 ARID_HMGB9-like 36..121 CDD:350636
HMG-box_AtHMGB9-like 215..281 CDD:438825 15/69 (22%)
Blue background indicates that the domain is not in the aligned region.

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