DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment tHMG2 and 3xHMG-box2

DIOPT Version :9

Sequence 1:	NP_001163689.1	Gene:	tHMG2 / 42651	FlyBaseID:	FBgn0038979	Length:	134	Species:	Drosophila melanogaster
Sequence 2:	NP_194111.1	Gene:	3xHMG-box2 / 828480	AraportID:	AT4G23800	Length:	456	Species:	Arabidopsis thaliana

Alignment Length:	154	Identity:	42/154 - (27%)
Similarity:	63/154 - (40%)	Gaps:	58/154 - (37%)

- Green bases have known domain annotations that are detailed below.

  Fly     8 RPKKPMSAFMLWMNSTGRKNIRAEHPDFSVQEVSVKGGEMWRAMADEHKIVWQESASK------- 65
            :||.|:|||:::.|.. |..:|.|:.  ||.||:...||.|:.::|:.|..:::.|.|
plant   254 KPKHPVSAFLVYANER-RAALREENK--SVVEVAKITGEEWKNLSDKKKAPYEKVAKKNKETYLQ 315

  Fly    66 AMAEYK---------EKLEKWNAFKEHQTESF----------------------------PHIYE 93
            ||.|||         :|.|:....|.|:.|:.                            |:..:
plant   316 AMEEYKRTKEEEALSQKKEEEELLKLHKQEALQMLKKKEKTDNLIKKEKATKKKKNENVDPNKPK 380

  Fly    94 APLSSRFSKTNQRPTLFVYDSKDE 117
            .|.||.|        ||   ||||
plant   381 KPASSYF--------LF---SKDE 393

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
tHMG2	NP_001163689.1	HMGB-UBF_HMG-box	9..75	CDD:238686	27/81 (33%)
3xHMG-box2	NP_194111.1	PTZ00121	<2..454	CDD:173412	42/154 (27%)
		HMGB-UBF_HMG-box	139..203	CDD:238686
		HMG-box	255..320	CDD:381793	23/67 (34%)
		HMGB-UBF_HMG-box	379..444	CDD:238686	10/26 (38%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG5648
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1641977at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	3	2.820