Protein Alignment tHMG2 and HMGB1

DIOPT Version :10

• Sequence 1: NP_001163689.1
• Gene: tHMG2 / 42651
• FlyBaseID: FBgn0038979
• Length: 134
• Species: Drosophila melanogaster
• Sequence 2: NP_974413.1
• Gene: HMGB1 / 824351
• AraportID: AT3G51880
• Length: 185
• Species: Arabidopsis thaliana
• Alignment Length: 82
• Identity: 25/82 - (30%)
• Similarity: 48/82 - (58%)
• Gaps: 3/82 - (3%)

  Fly     8 RPKKPMSAFMLWMNSTGRKNIRAEHPDF-SVQEVSVKGGEMWRAMADEHKIVWQESASKAMAEYK 71
            :||:..|||.:::... |...:.|:|:. :|..|...||:.|::|:...|..::|.|:|..|||:
plant    52 KPKRAPSAFFVFLEDF-RVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYE 115

  Fly    72 EKLEKWNA-FKEHQTES 87
            ::::.:|. .:|...||
plant   116 KQMDAYNKNLEEGSDES 132

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
tHMG2	NP_001163689.1	HMG-box_SSRP1-like	11..78	CDD:438810	19/67 (28%)
HMGB1	NP_974413.1	PRK05901	1..>171	CDD:235640	25/82 (30%)
		HMG-box_AtHMGB1-like	54..114	CDD:438821	18/60 (30%)