DRSC/TRiP Functional Genomics Resources

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Protein Alignment tHMG2 and Ssrp1

DIOPT Version :10

Sequence 1:NP_001163689.1 Gene:tHMG2 / 42651 FlyBaseID:FBgn0038979 Length:134 Species:Drosophila melanogaster
Sequence 2:XP_008760215.3 Gene:Ssrp1 / 81785 RGDID:621143 Length:802 Species:Rattus norvegicus


Alignment Length:119 Identity:35/119 - (29%)
Similarity:65/119 - (54%) Gaps:12/119 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 PKKPMSAFMLWMNSTGRKNIRAEHPDFSVQEVSVKGGEMWRAMADEHKIVWQESASKAMAEYKEK 73
            ||:||||:|||:|:: |:.|:::||..|:.::|.|.||:|:.|:.|.|..|...|..|..||::.
  Rat   640 PKRPMSAYMLWLNAS-REKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKA 703

  Fly    74 LEKW-----------NAFKEHQTESFPHIYEAPLSSRFSKTNQRPTLFVYDSKD 116
            ::::           .:.|:.:.::.......|.....||::.|.....:.||:
  Rat   704 MKEYEGGRGDSSKRDKSKKKKKVKAKLEKKSTPSRGSSSKSSSRQLSDSFKSKE 757

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tHMG2NP_001163689.1 HMG-box_SSRP1-like 11..78 CDD:438810 26/77 (34%)
Ssrp1XP_008760215.3 POB3 114..573 CDD:227494
HMG-box_SSRP1-like 642..708 CDD:438810 26/66 (39%)
Blue background indicates that the domain is not in the aligned region.

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