DRSC/TRiP Functional Genomics Resources

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Protein Alignment tHMG2 and Hmgxb4

DIOPT Version :9

Sequence 1:NP_001163689.1 Gene:tHMG2 / 42651 FlyBaseID:FBgn0038979 Length:134 Species:Drosophila melanogaster
Sequence 2:NP_821136.1 Gene:Hmgxb4 / 70823 MGIID:1918073 Length:594 Species:Mus musculus


Alignment Length:59 Identity:20/59 - (33%)
Similarity:35/59 - (59%) Gaps:2/59 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 GARPKKP-MSAFMLWMNSTGRKNIRAEHPDFSVQEVSVKGGEMWRAMADEHKIVWQESA 63
            |.:|||. |||:.::.... |..|.|:||.....|:|.|..|:|:.:.::.|::|::.|
Mouse   396 GEKPKKKNMSAYQVFCKEY-RVTIVADHPGIDFGELSKKLAEVWKQLPEKDKLIWKQKA 453

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tHMG2NP_001163689.1 HMGB-UBF_HMG-box 9..75 CDD:238686 19/56 (34%)
Hmgxb4NP_821136.1 DUF4171 107..225 CDD:290491
HMG-box 400..463 CDD:238037 18/55 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1641977at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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