DRSC/TRiP Functional Genomics Resources

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Protein Alignment tHMG2 and Hmgb4

DIOPT Version :9

Sequence 1:NP_001163689.1 Gene:tHMG2 / 42651 FlyBaseID:FBgn0038979 Length:134 Species:Drosophila melanogaster
Sequence 2:NP_081312.2 Gene:Hmgb4 / 69317 MGIID:1916567 Length:181 Species:Mus musculus


Alignment Length:90 Identity:25/90 - (27%)
Similarity:47/90 - (52%) Gaps:17/90 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MMSDYGAR----------PKKPMSAFMLWMNSTGRKN---IRAEHPDFSVQEVSVKGGEMWRAMA 52
            ||:..|.|          |:||.|:|:|:    .|.:   ::.|:||::|.:|:...|:||....
Mouse    75 MMNYIGKRRKRRKRDPKAPRKPPSSFLLF----SRDHYAMLKQENPDWTVVQVAKAAGKMWSTTD 135

  Fly    53 DEHKIVWQESASKAMAEYKEKLEKW 77
            :..|..:::.|:...|:|.|:.|.:
Mouse   136 EAEKKPYEQKAALMRAKYFEEQEAY 160

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tHMG2NP_001163689.1 HMGB-UBF_HMG-box 9..75 CDD:238686 20/68 (29%)
Hmgb4NP_081312.2 HMG-box 8..78 CDD:294061 2/2 (100%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 80..100 6/19 (32%)
HMG-box 93..156 CDD:238037 19/66 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5648
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1641977at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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