DRSC/TRiP Functional Genomics Resources

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Protein Alignment tHMG2 and Hmgb4l5

DIOPT Version :10

Sequence 1:NP_001163689.1 Gene:tHMG2 / 42651 FlyBaseID:FBgn0038979 Length:134 Species:Drosophila melanogaster
Sequence 2:XP_008771758.1 Gene:Hmgb4l5 / 691030 RGDID:1588662 Length:168 Species:Rattus norvegicus


Alignment Length:70 Identity:22/70 - (31%)
Similarity:43/70 - (61%) Gaps:1/70 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 PKKPMSAFMLWMNSTGRKNIRAEHPDFSVQEVSVKGGEMWRAMADEHKIVWQESASKAMAEYKEK 73
            |:||.|:|:|: :......|:.:||:::|.:|:...|.||...::..||.::|.|:...|:|.|:
  Rat    93 PRKPPSSFLLF-SQDHFDEIKEQHPNWTVGQVAKAAGRMWARCSEADKIPYEERAAVLRAKYLEE 156

  Fly    74 LEKWN 78
            .|.::
  Rat   157 REAYH 161

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tHMG2NP_001163689.1 HMG-box_SSRP1-like 11..78 CDD:438810 21/66 (32%)
Hmgb4l5XP_008771758.1 HMG-box_SF 8..76 CDD:469606
HMG-box_HMGB_rpt2 95..160 CDD:438795 21/65 (32%)
Blue background indicates that the domain is not in the aligned region.

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