DRSC/TRiP Functional Genomics Resources

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Protein Alignment tHMG2 and SSRP1

DIOPT Version :10

Sequence 1:NP_001163689.1 Gene:tHMG2 / 42651 FlyBaseID:FBgn0038979 Length:134 Species:Drosophila melanogaster
Sequence 2:XP_016873669.2 Gene:SSRP1 / 6749 HGNCID:11327 Length:875 Species:Homo sapiens


Alignment Length:76 Identity:30/76 - (39%)
Similarity:50/76 - (65%) Gaps:7/76 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 PKKPMSAFMLWMNSTGRKNIRAEHPDFSVQEVSVKGGEMWRAMADEHKIVWQESASKAMAEYKEK 73
            ||:||||:|||:|:: |:.|:::||..|:.::|.|.||:|:.|:.|.|..|...|..|..:|:: 
Human   713 PKRPMSAYMLWLNAS-REKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEK- 775

  Fly    74 LEKWNAFKEHQ 84
                 |.||::
Human   776 -----AMKEYE 781

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tHMG2NP_001163689.1 HMG-box_SSRP1-like 11..78 CDD:438810 25/66 (38%)
SSRP1XP_016873669.2 POB3 187..646 CDD:227494
HMG-box_SSRP1-like 715..781 CDD:438810 28/72 (39%)
Blue background indicates that the domain is not in the aligned region.

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