DRSC/TRiP Functional Genomics Resources

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Protein Alignment tHMG2 and Hmg20a

DIOPT Version :9

Sequence 1:NP_001163689.1 Gene:tHMG2 / 42651 FlyBaseID:FBgn0038979 Length:134 Species:Drosophila melanogaster
Sequence 2:NP_080088.1 Gene:Hmg20a / 66867 MGIID:1914117 Length:346 Species:Mus musculus


Alignment Length:80 Identity:20/80 - (25%)
Similarity:42/80 - (52%) Gaps:6/80 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 PKKPMSAFMLWMNSTGRKNIRAEHPDFSVQEVSVKGGEMWRAMADEHKIVWQESASKAMAEYKEK 73
            ||.|::.::.:||.. |:.:||:.|:....|::...|..|..:..|.|..:.:.|.:....|.::
Mouse   102 PKSPLTGYVRFMNER-REQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKE 165

  Fly    74 LEKWNAFKEHQTESF 88
            ||::     .:||::
Mouse   166 LEQY-----QKTEAY 175

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tHMG2NP_001163689.1 HMGB-UBF_HMG-box 9..75 CDD:238686 16/65 (25%)
Hmg20aNP_080088.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..112 3/9 (33%)
DUF5401 <76..312 CDD:375164 20/80 (25%)
HMGB-UBF_HMG-box 102..167 CDD:238686 16/65 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 178..210
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5648
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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