DRSC/TRiP Functional Genomics Resources

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Protein Alignment tHMG2 and tox

DIOPT Version :9

Sequence 1:NP_001163689.1 Gene:tHMG2 / 42651 FlyBaseID:FBgn0038979 Length:134 Species:Drosophila melanogaster
Sequence 2:NP_001243623.1 Gene:tox / 569666 ZFINID:ZDB-GENE-070912-181 Length:540 Species:Danio rerio


Alignment Length:122 Identity:34/122 - (27%)
Similarity:58/122 - (47%) Gaps:18/122 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 PKKPMSAFMLWMNSTGRKNIRAEHPDFSVQEVSVKGGEMWRAMADEHKIVWQESASKAMAEYKEK 73
            |:||:||:.|:...| :..|:.::|:.:..|||.....||..:.:|.|.|:::....|..||.::
Zfish   289 PQKPVSAYALFFRDT-QAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVYKKKTETAKKEYLKQ 352

  Fly    74 LEKWNAFKEHQTESFPHIYEAPLSSR--------FSKTNQ-RPTLFVYDSKDEAMAP 121
            |..:.|....|:.:.|...:|..:|:        ||...| .|.|:        |||
Zfish   353 LAAYRASLVSQSYNDPGDVKASQASQMLGPKPPVFSGAGQTHPGLY--------MAP 401

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tHMG2NP_001163689.1 HMGB-UBF_HMG-box 9..75 CDD:238686 20/65 (31%)
toxNP_001243623.1 HMG-box 289..>338 CDD:238037 16/49 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5648
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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