DRSC/TRiP Functional Genomics Resources

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Protein Alignment tHMG2 and hbp1

DIOPT Version :9

Sequence 1:NP_001163689.1 Gene:tHMG2 / 42651 FlyBaseID:FBgn0038979 Length:134 Species:Drosophila melanogaster
Sequence 2:NP_001019602.2 Gene:hbp1 / 554137 ZFINID:ZDB-GENE-050522-414 Length:494 Species:Danio rerio


Alignment Length:91 Identity:30/91 - (32%)
Similarity:49/91 - (53%) Gaps:14/91 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 GARP---KKPMSAFMLWMNSTGRKNIRAE----HPDFSVQEVSVKGGEMWRAMADEHKIVWQESA 63
            ||.|   |:||:||||:     .|..|.|    :|....:.:||..|:.|:.|.:|.:.::...|
Zfish   408 GATPTKCKRPMNAFMLF-----AKKYRVEYTQMYPGKDNRAISVILGDKWKKMKNEERRMYTMEA 467

  Fly    64 SKAMAEYKEKLEKWNAFKEHQTESFP 89
             ||:||.:::|.. :.:|..:|.|.|
Zfish   468 -KALAEEQKRLNP-DCWKRKRTNSGP 491

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tHMG2NP_001163689.1 HMGB-UBF_HMG-box 9..75 CDD:238686 23/72 (32%)
hbp1NP_001019602.2 AXH 210..328 CDD:285689
SOX-TCF_HMG-box 413..484 CDD:238684 23/77 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1641977at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

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