DRSC/TRiP Functional Genomics Resources

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Protein Alignment tHMG2 and hmg20b

DIOPT Version :10

Sequence 1:NP_001163689.1 Gene:tHMG2 / 42651 FlyBaseID:FBgn0038979 Length:134 Species:Drosophila melanogaster
Sequence 2:NP_001018387.1 Gene:hmg20b / 553572 ZFINID:ZDB-GENE-030131-4258 Length:301 Species:Danio rerio


Alignment Length:76 Identity:20/76 - (26%)
Similarity:41/76 - (53%) Gaps:1/76 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 PKKPMSAFMLWMNSTGRKNIRAEHPDFSVQEVSVKGGEMWRAMADEHKIVWQESASKAMAEYKEK 73
            ||.|::.::.::|.. |::|||.|||....|::.:.|..|..:|...|..:.:.|.:...:|..:
Zfish    53 PKAPVTGYVRFLNER-REHIRALHPDLPFPEITKRLGAEWSRLAPHDKQRYLDEAERDKMQYARE 116

  Fly    74 LEKWNAFKEHQ 84
            |.::...:.:|
Zfish   117 LREYQKSEAYQ 127

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tHMG2NP_001163689.1 HMG-box_SSRP1-like 11..78 CDD:438810 17/66 (26%)
hmg20bNP_001018387.1 HMG-box_HMG20B 52..136 CDD:438834 20/76 (26%)

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