DRSC/TRiP Functional Genomics Resources

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Protein Alignment tHMG2 and hbp1

DIOPT Version :9

Sequence 1:NP_001163689.1 Gene:tHMG2 / 42651 FlyBaseID:FBgn0038979 Length:134 Species:Drosophila melanogaster
Sequence 2:NP_001008149.2 Gene:hbp1 / 493511 XenbaseID:XB-GENE-950343 Length:541 Species:Xenopus tropicalis


Alignment Length:82 Identity:26/82 - (31%)
Similarity:45/82 - (54%) Gaps:11/82 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 KKPMSAFMLWMNSTGRKNIRAE----HPDFSVQEVSVKGGEMWRAMADEHKIVWQESASKAMAEY 70
            |:||:||||:     .|..|.|    :|....:.:||..|:.|:.|.:|.:.::...| ||:||.
 Frog   462 KRPMNAFMLF-----AKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRIYTIEA-KALAEE 520

  Fly    71 KEKLEKWNAFKEHQTES 87
            :::|.. :.:|..:|.|
 Frog   521 QKRLNP-DCWKRKRTNS 536

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tHMG2NP_001163689.1 HMGB-UBF_HMG-box 9..75 CDD:238686 22/68 (32%)
hbp1NP_001008149.2 AXH 242..362 CDD:369920
SOX-TCF_HMG-box 460..531 CDD:238684 23/75 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1641977at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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