DRSC/TRiP Functional Genomics Resources

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Protein Alignment tHMG2 and hmg20a

DIOPT Version :10

Sequence 1:NP_001163689.1 Gene:tHMG2 / 42651 FlyBaseID:FBgn0038979 Length:134 Species:Drosophila melanogaster
Sequence 2:NP_001006760.1 Gene:hmg20a / 448440 XenbaseID:XB-GENE-955353 Length:345 Species:Xenopus tropicalis


Alignment Length:98 Identity:25/98 - (25%)
Similarity:43/98 - (43%) Gaps:7/98 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 PKKPMSAFMLWMNSTGRKNIRAEHPDFSVQEVSVKGGEMWRAMADEHKIVWQESASKAMAEYKEK 73
            ||.|::.::.:||.. |:.:|.|.||....|::...|..|..:....|..:.:.|.|....|.::
 Frog   101 PKAPLTGYVRFMNER-REQLRTERPDVPFPEITRIVGSEWSKLPAHEKQHYLDEAEKDKERYTKE 164

  Fly    74 LEKWNAFKEHQTESFPHIYEAPLSSRFSKTNQR 106
            |:::.....:||      |.....||.....||
 Frog   165 LQQYQNTDAYQT------YSRKAQSRQKGRQQR 191

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tHMG2NP_001163689.1 HMG-box_SSRP1-like 11..78 CDD:438810 16/66 (24%)
hmg20aNP_001006760.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..124 8/23 (35%)
HMG-box_HMG20A 81..184 CDD:438833 21/89 (24%)
SMC_prok_B <151..>292 CDD:274008 11/47 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 167..198 7/31 (23%)

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