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Protein Alignment tHMG2 and hmgb3
DIOPT Version :10
| Sequence 1: | NP_001163689.1 |
Gene: | tHMG2 / 42651 |
FlyBaseID: | FBgn0038979 |
Length: | 134 |
Species: | Drosophila melanogaster |
| Sequence 2: | NP_001004888.1 |
Gene: | hmgb3 / 448228 |
XenbaseID: | XB-GENE-1002014 |
Length: | 202 |
Species: | Xenopus tropicalis |
| Alignment Length: | 86 |
Identity: | 29/86 - (33%) |
| Similarity: | 41/86 - (47%) |
Gaps: | 16/86 - (18%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 2 MSDYGA-----------RPKKPMSAFMLWMNSTGRKNIRAEHPDFSVQEVSVKGGEMWRAMADEH 55
|.|:|. .||:|.|.|.|:. |..|..|::.:|..|:.:|:.|.||||..:.|..
Frog 75 MKDFGPVKKGKKKKDPNAPKRPPSGFFLFC-SEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDGE 138
Fly 56 KIVWQESASKAMAEYKEKLEK 76
|..:...|:| .|||.||
Frog 139 KQPYNNKAAK----LKEKYEK 155
|
Known Domains:
Indicated by green bases in alignment.
| Gene | Sequence | Domain | Region |
External ID | Identity |
| tHMG2 | NP_001163689.1 |
HMG-box_SSRP1-like |
11..78 |
CDD:438810 |
24/66 (36%) |
Software error:
Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.
For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message
and the time and date of the error.