DRSC/TRiP Functional Genomics Resources

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Protein Alignment tHMG2 and hmgb2b

DIOPT Version :10

Sequence 1:NP_001163689.1 Gene:tHMG2 / 42651 FlyBaseID:FBgn0038979 Length:134 Species:Drosophila melanogaster
Sequence 2:NP_001004674.1 Gene:hmgb2b / 447936 ZFINID:ZDB-GENE-040912-122 Length:214 Species:Danio rerio


Alignment Length:71 Identity:20/71 - (28%)
Similarity:44/71 - (61%) Gaps:1/71 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 PKKPMSAFMLWMNSTGRKNIRAEHPDFSVQEVSVKGGEMWRAMADEHKIVWQESASKAMAEYKEK 73
            ||:|.|||.::. |..|..:::|||:.::.|::.|.||:|...:.:.:..:::.|.|...:|:::
Zfish    97 PKRPPSAFFVFC-SEYRPTVKSEHPNLTIGEIAKKLGELWSKQSSKDRAPFEQKAGKLREKYEKE 160

  Fly    74 LEKWNA 79
            :..:.|
Zfish   161 VAAYRA 166

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tHMG2NP_001163689.1 HMG-box_SSRP1-like 11..78 CDD:438810 17/66 (26%)
hmgb2bNP_001004674.1 HMG-box_HMGB_rpt1 8..76 CDD:438794
HMG-box_HMGB_rpt2 95..165 CDD:438795 19/68 (28%)
Blue background indicates that the domain is not in the aligned region.

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