DRSC/TRiP Functional Genomics Resources

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Protein Alignment tHMG2 and Sox21b

DIOPT Version :10

Sequence 1:NP_001163689.1 Gene:tHMG2 / 42651 FlyBaseID:FBgn0038979 Length:134 Species:Drosophila melanogaster
Sequence 2:NP_001261829.1 Gene:Sox21b / 39569 FlyBaseID:FBgn0042630 Length:587 Species:Drosophila melanogaster


Alignment Length:74 Identity:21/74 - (28%)
Similarity:37/74 - (50%) Gaps:10/74 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 KKPMSAFMLWMNSTGRKNIRAEHPDFSVQEVSVKGGEMWRAMADEHKIVWQESASKAMAEYKEKL 74
            |:||:|||:| :...|:.|..::|.....|:|.:.|..|:.:.:|.|..:.:.|.:..|.:    
  Fly   249 KRPMNAFMVW-SRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTEEEKRPFIDEAKRLRAMH---- 308

  Fly    75 EKWNAFKEH 83
                 .|||
  Fly   309 -----MKEH 312

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tHMG2NP_001163689.1 HMG-box_SSRP1-like 11..78 CDD:438810 17/66 (26%)
Sox21bNP_001261829.1 HMG-box_SoxB 246..325 CDD:438790 21/74 (28%)

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