DRSC/TRiP Functional Genomics Resources

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Protein Alignment tHMG2 and hmgb2

DIOPT Version :10

Sequence 1:NP_001163689.1 Gene:tHMG2 / 42651 FlyBaseID:FBgn0038979 Length:134 Species:Drosophila melanogaster
Sequence 2:NP_988904.1 Gene:hmgb2 / 394499 XenbaseID:XB-GENE-1000246 Length:212 Species:Xenopus tropicalis


Alignment Length:68 Identity:26/68 - (38%)
Similarity:39/68 - (57%) Gaps:5/68 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 PKKPMSAFMLWMNSTGRKNIRAEHPDFSVQEVSVKGGEMWRAMADEHKIVWQESASKAMAEYKEK 73
            ||:|.|||.|:. |..|..|::|.|..|:.:.:.|.||||.....:.|:.:::.|:|    .|||
 Frog    96 PKRPPSAFFLFC-SEHRPQIKSESPGLSIGDTAKKLGEMWSEQTPKDKLPYEQKAAK----LKEK 155

  Fly    74 LEK 76
            .||
 Frog   156 YEK 158

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tHMG2NP_001163689.1 HMG-box_SSRP1-like 11..78 CDD:438810 24/66 (36%)
hmgb2NP_988904.1 HMG-box_HMGB_rpt1 8..76 CDD:438794
HMG-box_HMGB_rpt2 94..164 CDD:438795 26/68 (38%)
Blue background indicates that the domain is not in the aligned region.

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