DRSC/TRiP Functional Genomics Resources

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Protein Alignment tHMG2 and CG12104

DIOPT Version :9

Sequence 1:NP_001163689.1 Gene:tHMG2 / 42651 FlyBaseID:FBgn0038979 Length:134 Species:Drosophila melanogaster
Sequence 2:NP_001261267.1 Gene:CG12104 / 38187 FlyBaseID:FBgn0035238 Length:250 Species:Drosophila melanogaster


Alignment Length:108 Identity:29/108 - (26%)
Similarity:50/108 - (46%) Gaps:20/108 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 PKKPMSAFMLWMNSTGRKNIRAEHPDFSVQEVSVKGGEMWRAMADEHKIVW-----QESAS--KA 66
            |.||::.|.|:...|... |:.::|..|::::.|....||.::.:..|.|:     ||...  :.
  Fly    76 PPKPLAPFALFFRDTVTA-IKQQNPTCSLEQMQVIVQTMWESLDETQKNVYALRHEQEKREYVRL 139

  Fly    67 MAEYKEKLEKWNAFKEHQTESFPHIYEAPLSSRFSKTNQRPTL 109
            |..|:.:|.:    .|..:|:     |||.:   ..|||.|.|
  Fly   140 MRGYRHQLSE----SEGTSEA-----EAPPA---VATNQPPPL 170

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tHMG2NP_001163689.1 HMGB-UBF_HMG-box 9..75 CDD:238686 18/72 (25%)
CG12104NP_001261267.1 HMG-box 76..140 CDD:238037 16/64 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5648
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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