DRSC/TRiP Functional Genomics Resources

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Protein Alignment tHMG2 and HmgD

DIOPT Version :10

Sequence 1:NP_001163689.1 Gene:tHMG2 / 42651 FlyBaseID:FBgn0038979 Length:134 Species:Drosophila melanogaster
Sequence 2:NP_726109.1 Gene:HmgD / 37481 FlyBaseID:FBgn0004362 Length:112 Species:Drosophila melanogaster


Alignment Length:78 Identity:35/78 - (44%)
Similarity:54/78 - (69%) Gaps:6/78 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 MSDYGARPKKPMSAFMLWMNSTGRKNIRAEHPDFSVQEVSVKGGEMWRAMADEHKIVWQESASKA 66
            |||   :||:|:||:|||:|| .|::|:.|:|...|.||:.:|||:||||.|  |..|:..|:||
  Fly     1 MSD---KPKRPLSAYMLWLNS-ARESIKRENPGIKVTEVAKRGGELWRAMKD--KSEWEAKAAKA 59

  Fly    67 MAEYKEKLEKWNA 79
            ..:|...::::.|
  Fly    60 KDDYDRAVKEFEA 72

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tHMG2NP_001163689.1 HMG-box_SSRP1-like 11..78 CDD:438810 29/66 (44%)
HmgDNP_726109.1 HMG-box_SSRP1-like 7..71 CDD:438810 29/66 (44%)

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