DRSC/TRiP Functional Genomics Resources

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Protein Alignment tHMG2 and ubtf

DIOPT Version :10

Sequence 1:NP_001163689.1 Gene:tHMG2 / 42651 FlyBaseID:FBgn0038979 Length:134 Species:Drosophila melanogaster
Sequence 2:NP_001005395.1 Gene:ubtf / 368509 ZFINID:ZDB-GENE-030616-252 Length:735 Species:Danio rerio


Alignment Length:78 Identity:19/78 - (24%)
Similarity:40/78 - (51%) Gaps:4/78 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 PKKPMSAFMLWMNSTGRKNIRAEHPDFSVQEVSVKGGEMWRAMADEHKIVWQESASKAMAEYKEK 73
            |:|..:...||.:...:..::| |||.:.:::....|:.|..::|:.:|.|   .:|::.::|..
Zfish   189 PEKAKTPQQLWYSHEKKAFLKA-HPDATTKDIKDNLGKQWPQLSDKKRIKW---IAKSLEQHKLY 249

  Fly    74 LEKWNAFKEHQTE 86
            .||...|.:...|
Zfish   250 EEKMREFIQQHPE 262

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tHMG2NP_001163689.1 HMG-box_SSRP1-like 11..78 CDD:438810 16/66 (24%)
ubtfNP_001005395.1 HMG-box_UBF1_rpt1-like 101..177 CDD:438814
HMG-box_UBF1_rpt2 189..262 CDD:438815 18/76 (24%)
HMG-box_UBF1_rpt3 290..372 CDD:438816
HMG-box_UBF1_rpt4 398..463 CDD:438817
HMG-box_SF 469..552 CDD:469606
HMG-box_UBF1_rpt6-like 555..640 CDD:438819
Blue background indicates that the domain is not in the aligned region.

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