DRSC/TRiP Functional Genomics Resources

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Protein Alignment tHMG2 and hmg20a

DIOPT Version :10

Sequence 1:NP_001163689.1 Gene:tHMG2 / 42651 FlyBaseID:FBgn0038979 Length:134 Species:Drosophila melanogaster
Sequence 2:NP_001082803.1 Gene:hmg20a / 326908 ZFINID:ZDB-GENE-030131-5107 Length:291 Species:Danio rerio


Alignment Length:82 Identity:23/82 - (28%)
Similarity:42/82 - (51%) Gaps:6/82 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 PKKPMSAFMLWMNSTGRKNIRAEHPDFSVQEVSVKGGEMWRAMADEHKIVWQESASKAMAEYKEK 73
            ||.|::.::.:||.. |:.:|||.||....|::...|..|..:..:.|..:.:.|.|....|..:
Zfish    45 PKAPLTGYVRFMNER-REQLRAERPDVPFPEITRMLGNEWSKLPADEKQRYLDEADKDKERYMRE 108

  Fly    74 LEKWNAFKEHQTESFPH 90
            ||::     .:||::.|
Zfish   109 LEQY-----QKTEAYKH 120

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tHMG2NP_001163689.1 HMG-box_SSRP1-like 11..78 CDD:438810 18/66 (27%)
hmg20aNP_001082803.1 HMG-box_HMG20A 25..128 CDD:438833 23/82 (28%)

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