DRSC/TRiP Functional Genomics Resources

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Protein Alignment tHMG2 and hmgb1a

DIOPT Version :10

Sequence 1:NP_001163689.1 Gene:tHMG2 / 42651 FlyBaseID:FBgn0038979 Length:134 Species:Drosophila melanogaster
Sequence 2:NP_955849.2 Gene:hmgb1a / 321622 ZFINID:ZDB-GENE-030131-341 Length:205 Species:Danio rerio


Alignment Length:68 Identity:25/68 - (36%)
Similarity:40/68 - (58%) Gaps:5/68 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 PKKPMSAFMLWMNSTGRKNIRAEHPDFSVQEVSVKGGEMWRAMADEHKIVWQESASKAMAEYKEK 73
            ||:|.|||.::. |..|..::.|.|..|:.:|:.:.||||..::.|.|..:::.|:|    .|||
Zfish    94 PKRPPSAFFIFC-SEFRPKVKEETPGLSIGDVAKRLGEMWNKISSEEKQPYEKKAAK----LKEK 153

  Fly    74 LEK 76
            .||
Zfish   154 YEK 156

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tHMG2NP_001163689.1 HMG-box_SSRP1-like 11..78 CDD:438810 23/66 (35%)
hmgb1aNP_955849.2 HMG-box_HMGB_rpt1 7..75 CDD:438794
HMG-box_HMGB_rpt2 92..162 CDD:438795 25/68 (37%)
Blue background indicates that the domain is not in the aligned region.

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