Protein Alignment tHMG2 and Hmgb3

DIOPT Version :9

• Sequence 1: NP_001163689.1
• Gene: tHMG2 / 42651
• FlyBaseID: FBgn0038979
• Length: 134
• Species: Drosophila melanogaster
• Sequence 2: XP_003751730.1
• Gene: Hmgb3 / 305373
• RGDID: 1564407
• Length: 241
• Species: Rattus norvegicus
• Alignment Length: 86
• Identity: 32/86 - (37%)
• Similarity: 44/86 - (51%)
• Gaps: 16/86 - (18%)

  Fly     2 MSDYGA-----------RPKKPMSAFMLWMNSTGRKNIRAEHPDFSVQEVSVKGGEMWRAMADEH 55
            |.|||.           .||:|.|.|.|:. |..|..|::.:|..|:.:|:.|.||||..::|..
  Rat   116 MKDYGPAKGGKKKKDPNAPKRPPSGFFLFC-SEFRPKIKSANPGISIGDVAKKLGEMWNNLSDSE 179

  Fly    56 KIVWQESASKAMAEYKEKLEK 76
            |   |...:|| |:.|||.||
  Rat   180 K---QPYMTKA-AKLKEKYEK 196

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
tHMG2	NP_001163689.1	HMGB-UBF_HMG-box	9..75	CDD:238686	26/65 (40%)
Hmgb3	XP_003751730.1	HMG_box_2	54..119	CDD:286146	1/2 (50%)
		HMG_box	134..201	CDD:278906	28/68 (41%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1641977at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.920