DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tHMG2 and cmb1

DIOPT Version :9

Sequence 1:NP_001163689.1 Gene:tHMG2 / 42651 FlyBaseID:FBgn0038979 Length:134 Species:Drosophila melanogaster
Sequence 2:NP_593693.1 Gene:cmb1 / 2543595 PomBaseID:SPAC4G9.11c Length:223 Species:Schizosaccharomyces pombe


Alignment Length:78 Identity:21/78 - (26%)
Similarity:38/78 - (48%) Gaps:6/78 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 PKKPMSAFMLWM-----NSTGRKNIRAEHPDFSVQEVSVKGGEMWRAMADEHKIVWQESASKAMA 68
            ||||.|||:|:.     |...|:.:.......::.|.:....:.|:.:|::.|..:.:. |||:.
pombe   147 PKKPSSAFILFYKELRNNPKLRQELGIPEAISTLVEETQNASKAWKELAEDKKKPFIDK-SKALK 210

  Fly    69 EYKEKLEKWNAFK 81
            |..:|..|...|:
pombe   211 EQYDKFMKEAGFR 223

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tHMG2NP_001163689.1 HMGB-UBF_HMG-box 9..75 CDD:238686 19/70 (27%)
cmb1NP_593693.1 NHP6B 1..220 CDD:227935 20/73 (27%)
HMGB-UBF_HMG-box 147..218 CDD:238686 19/71 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5648
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.