DRSC/TRiP Functional Genomics Resources

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Protein Alignment tHMG2 and sem-2

DIOPT Version :10

Sequence 1:NP_001163689.1 Gene:tHMG2 / 42651 FlyBaseID:FBgn0038979 Length:134 Species:Drosophila melanogaster
Sequence 2:NP_740846.1 Gene:sem-2 / 172162 WormBaseID:WBGene00004771 Length:404 Species:Caenorhabditis elegans


Alignment Length:110 Identity:30/110 - (27%)
Similarity:45/110 - (40%) Gaps:14/110 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 KKPMSAFMLWMNSTGRKNIRAEHPDFSVQEVSVKGGEMWRAMADEHKIVWQESASKA----MAEY 70
            |:||:|||:| :...|:.|....||....|:|.:.|..||::.||.|..:...|.:.    |.||
 Worm    94 KRPMNAFMVW-SQMERRKICEHQPDMHNAEISKQLGSRWRSLTDEEKAPFVAEAERLRVCHMQEY 157

  Fly    71 ---------KEKLEKWNAFKEHQTESFPHIYEAPLSSRFSKTNQR 106
                     |.|.......::......|...:||......:..||
 Worm   158 PDYKYKPRKKPKKNPDGTLQQPAQPQAPQQQQAPPRGASPQARQR 202

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tHMG2NP_001163689.1 HMG-box_SSRP1-like 11..78 CDD:438810 24/79 (30%)
sem-2NP_740846.1 HMG-box_SoxC 92..159 CDD:438838 23/65 (35%)

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