DRSC/TRiP Functional Genomics Resources

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Protein Alignment tHMG2 and LOC103690904

DIOPT Version :10

Sequence 1:NP_001163689.1 Gene:tHMG2 / 42651 FlyBaseID:FBgn0038979 Length:134 Species:Drosophila melanogaster
Sequence 2:XP_008771804.2 Gene:LOC103690904 / 103690904 RGDID:9317736 Length:168 Species:Rattus norvegicus


Alignment Length:69 Identity:22/69 - (31%)
Similarity:43/69 - (62%) Gaps:1/69 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 PKKPMSAFMLWMNSTGRKNIRAEHPDFSVQEVSVKGGEMWRAMADEHKIVWQESASKAMAEYKEK 73
            |:||.|:|:|: :....:.|:.:||:::|.:|:...|.||...::..||.::|.|:...|:|.|:
  Rat    93 PRKPPSSFLLF-SQDHFEEIKEQHPNWTVAQVAKAAGRMWARCSEADKIPYEERAAVLRAKYLEE 156

  Fly    74 LEKW 77
            .|.:
  Rat   157 REAY 160

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tHMG2NP_001163689.1 HMG-box_SSRP1-like 11..78 CDD:438810 21/67 (31%)
LOC103690904XP_008771804.2 HMG-box_SF 8..76 CDD:469606
HMG-box_HMGB_rpt2 95..161 CDD:438795 21/67 (31%)
Blue background indicates that the domain is not in the aligned region.

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