DRSC/TRiP Functional Genomics Resources

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Protein Alignment tHMG2 and sox8

DIOPT Version :10

Sequence 1:NP_001163689.1 Gene:tHMG2 / 42651 FlyBaseID:FBgn0038979 Length:134 Species:Drosophila melanogaster
Sequence 2:XP_002932315.2 Gene:sox8 / 100497725 XenbaseID:XB-GENE-480865 Length:466 Species:Xenopus tropicalis


Alignment Length:101 Identity:27/101 - (26%)
Similarity:48/101 - (47%) Gaps:17/101 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 ARP--KKPMSAFMLWMNSTGRKNIRAEHPDFSVQEVSVKGGEMWRAMADEHKIVWQESASKAMAE 69
            |:|  |:||:|||:|..:..|| :..::|.....|:|...|::||.:::..|..:.|.|.:...:
 Frog   101 AKPHVKRPMNAFMVWAQAARRK-LADQYPHLHNAELSKTLGKLWRLLSENEKRPFVEEAERLRVQ 164

  Fly    70 YKEKLEKWNAFKEHQTESFPHIYEAPLSSRFSKTNQ 105
            :|         |:|     |.....|...:.:|..|
 Frog   165 HK---------KDH-----PDYKYQPRRRKSAKAGQ 186

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tHMG2NP_001163689.1 HMG-box_SSRP1-like 11..78 CDD:438810 18/66 (27%)
sox8XP_002932315.2 Sox_N <39..94 CDD:463586
HMG-box_SoxE 104..178 CDD:438840 23/88 (26%)
DUF5585 <308..>466 CDD:465521
Blue background indicates that the domain is not in the aligned region.

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