DRSC/TRiP Functional Genomics Resources

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Protein Alignment tHMG2 and Hmgb4l1

DIOPT Version :10

Sequence 1:NP_001163689.1 Gene:tHMG2 / 42651 FlyBaseID:FBgn0038979 Length:134 Species:Drosophila melanogaster
Sequence 2:XP_003752207.1 Gene:Hmgb4l1 / 100364877 RGDID:2320188 Length:168 Species:Rattus norvegicus


Alignment Length:78 Identity:24/78 - (30%)
Similarity:45/78 - (57%) Gaps:5/78 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 PKKPMSAFMLWMNSTGRKNIRAEHPDFSVQEVSVKGGEMWRAMADEHKIVWQESASKAMAEYKEK 73
            |:||.|:|:|: :......|:.:||:::|.:|:...|.||...::..||.::|.|:...|:|.|:
  Rat    93 PRKPPSSFLLF-SQDHFDEIKEQHPNWTVAQVAKAAGRMWARCSEADKIPYEERAAVLRAKYLEE 156

  Fly    74 LEKWNAFKEHQTE 86
            .|.:    .||.:
  Rat   157 REAY----YHQCQ 165

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tHMG2NP_001163689.1 HMG-box_SSRP1-like 11..78 CDD:438810 21/66 (32%)
Hmgb4l1XP_003752207.1 HMG-box_HMGB_rpt1 8..76 CDD:438794
HMG-box_HMGB_rpt2 95..161 CDD:438795 21/70 (30%)
Blue background indicates that the domain is not in the aligned region.

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