DRSC/TRiP Functional Genomics Resources

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Protein Alignment tHMG2 and sox10

DIOPT Version :10

Sequence 1:NP_001163689.1 Gene:tHMG2 / 42651 FlyBaseID:FBgn0038979 Length:134 Species:Drosophila melanogaster
Sequence 2:NP_001093691.1 Gene:sox10 / 100101700 XenbaseID:XB-GENE-480304 Length:436 Species:Xenopus tropicalis


Alignment Length:20 Identity:8/20 - (40%)
Similarity:10/20 - (50%) Gaps:0/20 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly   180 GLGGPVGDGKHDLPWIHADD 199
            |.||..|:|.:..|..|..|
 Frog    25 GGGGEPGEGAYSQPGYHVRD 44

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tHMG2NP_001163689.1 HMG-box_SSRP1-like 11..78 CDD:438810
sox10NP_001093691.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..55 8/20 (40%)
Sox_N 12..79 CDD:463586 8/20 (40%)
Dimerization (DIM). /evidence=ECO:0000250|UniProtKB:P56693 48..88
HMG-box_SoxE 89..163 CDD:438840
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 145..183
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 195..257
Transactivation domain (TAM). /evidence=ECO:0000250|UniProtKB:P56693 209..295
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 322..346
Transactivation domain (TAC). /evidence=ECO:0000250|UniProtKB:P56693 327..436
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 413..436
Blue background indicates that the domain is not in the aligned region.

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