DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tHMG1 and tfam

DIOPT Version :10

Sequence 1:NP_651055.1 Gene:tHMG1 / 42650 FlyBaseID:FBgn0038978 Length:126 Species:Drosophila melanogaster
Sequence 2:NP_001070857.1 Gene:tfam / 571106 ZFINID:ZDB-GENE-061013-552 Length:277 Species:Danio rerio


Alignment Length:84 Identity:23/84 - (27%)
Similarity:37/84 - (44%) Gaps:18/84 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 PKKPMSAFMLWMNSTGRKHIKAEHPDFSVQEVSVKG-------GEMWRAMADEDKIVWQESATTA 65
            ||:|::|:|.:        :|...|..|.|..|:|.       .:.|:.:..|.|..:|.::..|
Zfish    47 PKRPLTAYMTF--------VKDMQPTVSKQNPSIKSVDVMRKIAQQWKMLTTEQKQPFQVASLEA 103

  Fly    66 MAEYK---EKLKQWNFPKE 81
            ..:||   ||.|....|.|
Zfish   104 KEQYKLALEKFKAQLTPAE 122

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tHMG1NP_651055.1 HMG_box 8..76 CDD:459837 21/77 (27%)
tfamNP_001070857.1 HMG-box_SF 49..107 CDD:438789 14/65 (22%)
HMG-box_TFAM_rpt2 132..231 CDD:438803
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.