DRSC/TRiP Functional Genomics Resources

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Protein Alignment tHMG1 and sox11

DIOPT Version :10

Sequence 1:NP_651055.1 Gene:tHMG1 / 42650 FlyBaseID:FBgn0038978 Length:126 Species:Drosophila melanogaster
Sequence 2:NP_001008053.1 Gene:sox11 / 493415 XenbaseID:XB-GENE-483418 Length:383 Species:Xenopus tropicalis


Alignment Length:81 Identity:20/81 - (24%)
Similarity:30/81 - (37%) Gaps:20/81 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 LLRPRLYRCPANQMF-VEGQC----VQRD-----WSNMPPGTIVPYECVRPGLFADPAHCRYYYS 78
            ||.|.....|::..| |...|    .:||     ...:||...|.. |     |....||:::  
 Frog   137 LLEPETQDIPSSWTFPVASICGVSASKRDERCCFLYALPPAQDVQL-C-----FPSVGHCQWF-- 193

  Fly    79 CNAELVATHLQCPEGT 94
            |.  |:...:..|:.|
 Frog   194 CG--LIQAWVTNPDST 207

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tHMG1NP_651055.1 HMG_box 8..76 CDD:459837 16/61 (26%)
sox11NP_001008053.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..24
HMG-box_SoxC_SOX11 37..128 CDD:438846
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 115..174 9/36 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 197..231 2/11 (18%)
Blue background indicates that the domain is not in the aligned region.

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