DRSC/TRiP Functional Genomics Resources

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Protein Alignment tHMG1 and HmgD

DIOPT Version :9

Sequence 1:NP_651055.1 Gene:tHMG1 / 42650 FlyBaseID:FBgn0038978 Length:126 Species:Drosophila melanogaster
Sequence 2:NP_001163244.1 Gene:HmgD / 37481 FlyBaseID:FBgn0004362 Length:112 Species:Drosophila melanogaster


Alignment Length:76 Identity:35/76 - (46%)
Similarity:51/76 - (67%) Gaps:6/76 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSDCGARPKKPMSAFMLWMNSTGRKHIKAEHPDFSVQEVSVKGGEMWRAMADEDKIVWQESATTA 65
            |||   :||:|:||:|||:|| .|:.||.|:|...|.||:.:|||:||||  :||..|:..|..|
  Fly     1 MSD---KPKRPLSAYMLWLNS-ARESIKRENPGIKVTEVAKRGGELWRAM--KDKSEWEAKAAKA 59

  Fly    66 MAEYKEKLKQW 76
            ..:|...:|::
  Fly    60 KDDYDRAVKEF 70

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tHMG1NP_651055.1 HMGB-UBF_HMG-box 8..74 CDD:238686 31/65 (48%)
Herpes_U55 <55..>116 CDD:253772 6/22 (27%)
HmgDNP_001163244.1 HMGB-UBF_HMG-box 5..68 CDD:238686 31/65 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 57 1.000 Domainoid score I3986
eggNOG 1 0.900 - - E1_COG5648
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 55 1.000 Inparanoid score I2031
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1641977at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.870

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