DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tHMG1 and hmg20a

DIOPT Version :10

Sequence 1:NP_651055.1 Gene:tHMG1 / 42650 FlyBaseID:FBgn0038978 Length:126 Species:Drosophila melanogaster
Sequence 2:NP_001082803.1 Gene:hmg20a / 326908 ZFINID:ZDB-GENE-030131-5107 Length:291 Species:Danio rerio


Alignment Length:99 Identity:26/99 - (26%)
Similarity:44/99 - (44%) Gaps:18/99 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSDCGARPKKPMSAFMLWMNSTGRKHIKAEHPDFSVQEVSVKGGEMWRAM-----------ADED 54
            :.|..| ||.|::.::.:||.. |:.::||.||....|::...|..|..:           ||:|
Zfish    39 LKDSNA-PKAPLTGYVRFMNER-REQLRAERPDVPFPEITRMLGNEWSKLPADEKQRYLDEADKD 101

  Fly    55 KIVW-----QESATTAMAEYKEKLKQWNFPKEHR 83
            |..:     |...|.|...:..|:::....|.||
Zfish   102 KERYMRELEQYQKTEAYKHFSRKVQEKQKGKRHR 135

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tHMG1NP_651055.1 HMG_box 8..76 CDD:459837 21/83 (25%)
hmg20aNP_001082803.1 HMG-box_HMG20A 25..128 CDD:438833 23/90 (26%)

Return to query results.
Submit another query.