DRSC/TRiP Functional Genomics Resources

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Protein Alignment tHMG1 and RGD1561558

DIOPT Version :9

Sequence 1:NP_651055.1 Gene:tHMG1 / 42650 FlyBaseID:FBgn0038978 Length:126 Species:Drosophila melanogaster
Sequence 2:XP_038956285.1 Gene:RGD1561558 / 317314 RGDID:1561558 Length:168 Species:Rattus norvegicus


Alignment Length:68 Identity:24/68 - (35%)
Similarity:41/68 - (60%) Gaps:7/68 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 PKKPMSAFMLWMNSTGRKH---IKAEHPDFSVQEVSVKGGEMWRAMADEDKIVWQESATTAMAEY 69
            |:||.|:|:|:    .:.|   ||.:||:::|.:|:...|.||...::.|||.::|.|....|:|
  Rat    93 PRKPPSSFLLF----SQDHFDEIKEQHPNWTVAQVAKAAGRMWARCSEADKIPYEERAAVLRAKY 153

  Fly    70 KEK 72
            .|:
  Rat   154 LEE 156

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tHMG1NP_651055.1 HMGB-UBF_HMG-box 8..74 CDD:238686 24/68 (35%)
Herpes_U55 <55..>116 CDD:253772 7/18 (39%)
RGD1561558XP_038956285.1 HMGB-UBF_HMG-box 9..76 CDD:238686
HMGB-UBF_HMG-box 95..158 CDD:238686 23/66 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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