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Protein Alignment tHMG1 and Hmgb1

DIOPT Version :10

Sequence 1:	NP_651055.1	Gene:	tHMG1 / 42650	FlyBaseID:	FBgn0038978	Length:	126	Species:	Drosophila melanogaster
Sequence 2:	NP_037095.1	Gene:	Hmgb1 / 25459	RGDID:	2802	Length:	215	Species:	Rattus norvegicus

Alignment Length:	68	Identity:	29/68 - (42%)
Similarity:	41/68 - (60%)	Gaps:	5/68 - (7%)

- Green bases have known domain annotations that are detailed below.

  Fly     8 PKKPMSAFMLWMNSTGRKHIKAEHPDFSVQEVSVKGGEMWRAMADEDKIVWQESATTAMAEYKEK 72
            ||:|.|||.|:. |..|..||.|||..|:.:|:.|.||||...|.:||..:::.|    |:.|||
  Rat    95 PKRPPSAFFLFC-SEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKA----AKLKEK 154

  Fly    73 LKQ 75
            .::
  Rat   155 YEK 157

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.