DRSC/TRiP Functional Genomics Resources

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Protein Alignment tHMG1 and Tfam

DIOPT Version :9

Sequence 1:NP_651055.1 Gene:tHMG1 / 42650 FlyBaseID:FBgn0038978 Length:126 Species:Drosophila melanogaster
Sequence 2:NP_033386.1 Gene:Tfam / 21780 MGIID:107810 Length:243 Species:Mus musculus


Alignment Length:79 Identity:25/79 - (31%)
Similarity:45/79 - (56%) Gaps:8/79 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SDCGARPKKPMSAFMLWMNSTGRKHIKAEHPDFSVQEVSVKGGEMWRAMADEDKIVWQ------- 59
            |..|:.||||||:::.:......| .||:|||..:.|:..|...:||.:.:.:|.|::       
Mouse    43 SSMGSYPKKPMSSYLRFSTEQLPK-FKAKHPDAKLSELVRKIAALWRELPEAEKKVYEADFKAEW 106

  Fly    60 ESATTAMAEYKEKL 73
            ::...|:::|||:|
Mouse   107 KAYKEAVSKYKEQL 120

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tHMG1NP_651055.1 HMGB-UBF_HMG-box 8..74 CDD:238686 23/73 (32%)
Herpes_U55 <55..>116 CDD:253772 7/26 (27%)
TfamNP_033386.1 HMG_box 49..116 CDD:278906 19/67 (28%)
HMGB-UBF_HMG-box 154..215 CDD:238686
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5648
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1641977at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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