DRSC/TRiP Functional Genomics Resources

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Protein Alignment tHMG1 and hmg-6

DIOPT Version :9

Sequence 1:NP_651055.1 Gene:tHMG1 / 42650 FlyBaseID:FBgn0038978 Length:126 Species:Drosophila melanogaster
Sequence 2:NP_493451.2 Gene:hmg-6 / 185946 WormBaseID:WBGene00009827 Length:128 Species:Caenorhabditis elegans


Alignment Length:69 Identity:16/69 - (23%)
Similarity:35/69 - (50%) Gaps:8/69 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 SAFMLWMNSTGRKHI-KAEHPDFSVQEVSVKGGEMWRAMADEDKIVW----QESATTAMAE-YKE 71
            ||:.|:...  |:.: |...|..:..::|.|....|.::.:|:|..:    :::..|::|. .:|
 Worm    54 SAYALFFRE--RQSLEKRAAPYATFGQISQKIARQWDSLTEEEKKAYKQRCEKNRKTSIANAVEE 116

  Fly    72 KLKQ 75
            |.:|
 Worm   117 KARQ 120

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tHMG1NP_651055.1 HMGB-UBF_HMG-box 8..74 CDD:238686 15/66 (23%)
Herpes_U55 <55..>116 CDD:253772 6/26 (23%)
hmg-6NP_493451.2 HMG-box 51..107 CDD:238037 11/54 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5648
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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