DRSC/TRiP Functional Genomics Resources

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Protein Alignment tHMG1 and hmg-20

DIOPT Version :10

Sequence 1:NP_651055.1 Gene:tHMG1 / 42650 FlyBaseID:FBgn0038978 Length:126 Species:Drosophila melanogaster
Sequence 2:NP_493178.1 Gene:hmg-20 / 173124 WormBaseID:WBGene00012209 Length:386 Species:Caenorhabditis elegans


Alignment Length:98 Identity:19/98 - (19%)
Similarity:43/98 - (43%) Gaps:11/98 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 PKKPMSAFMLWMNSTGRKHIKAEHPDFSVQEVSVKGGEMWRAMADEDKIVWQESATTAMAEYKEK 72
            ||:..|.::.::......:.||.   .|.:|:::.....|:.:..|::|.:|:.|.....:|.|.
 Worm   127 PKRNRSGYVHFIIHRRASYSKAV---MSQREINISLAADWQKLTAEERIPFQQRADEEKVKYLEL 188

  Fly    73 LKQWNFPKEH--------RFSDTQCICSSNTNQ 97
            ::::.....|        :|..:|...|.|..:
 Worm   189 MEEYKKTDSHKEFQKKRAKFLSSQSNGSKNAKK 221

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tHMG1NP_651055.1 HMG_box 8..76 CDD:459837 14/67 (21%)
hmg-20NP_493178.1 HMG-box_SF 126..204 CDD:469606 15/79 (19%)

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