DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CCT1 and cct-2

DIOPT Version :9

Sequence 1:NP_524450.2 Gene:CCT1 / 42649 FlyBaseID:FBgn0003676 Length:557 Species:Drosophila melanogaster
Sequence 2:NP_741031.1 Gene:cct-2 / 174421 WormBaseID:WBGene00000378 Length:529 Species:Caenorhabditis elegans


Alignment Length:533 Identity:182/533 - (34%)
Similarity:290/533 - (54%) Gaps:28/533 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 QSGASVRTQNVMAALSISNIVKSSLGPVGLDKMLV----DDIGDVTVTNDGATILRLLEVEHPAA 75
            :.|.|.|..:.:.|::|.::|||:|||.|:||:|:    :..|.:.|||||||||:.:.|::|||
 Worm    14 ERGESARLSSFVGAIAIGDLVKSTLGPKGMDKILISGNPESAGGIKVTNDGATILKSIGVDNPAA 78

  Fly    76 KVLVELAQLQDEEVGDGTTSVVILAAELLKNADELVKQKIHPTSIISGYRIACKEACKYISEHLT 140
            ||||:::..||.|||||||||.:|||||||.|::||.|:|||.:||||||.|...|.:.:.:...
 Worm    79 KVLVDMSMTQDHEVGDGTTSVTVLAAELLKEAEKLVNQRIHPQTIISGYRRALGIAQESLKKSSI 143

  Fly   141 APVDELGRDSLINIAKTSMSSKIIGADAEFFSAMVVDAAQSVKITDPRGQAAYSIKAINVLKAHG 205
            ...|.: ||.|:.||:|::.|||:....|.|:.:.|||...:|       .:.::.||.::|..|
 Worm   144 ESGDNI-RDDLLKIARTTLGSKILSQHKEHFAQLAVDAVLRLK-------GSGNLDAIQIIKKLG 200

  Fly   206 KSARESVLIPGYALNCTIASQQMPKKIVNAKIACLDFSLQKTKMKM-GVQVLINDPDKLEAIRAR 269
            .|..||.|..|:.|. .:.....|:::..|||...:..:...|:|: |.:|.::...|:..:.|.
 Worm   201 GSMNESYLDEGFLLE-KLPGMFQPRRVEKAKILIANTPMDTDKVKVFGSRVRVDGVAKVAELEAA 264

  Fly   270 ELDITKERINMILGTGVNVVLVSGGVDDLCMKYFVEAGAMAVRRVKKSDLKIIAKATGAAFITSL 334
            |....||:::.||....||.:....:.:...:.|.:|..||:.......::.:|...|...:::.
 Worm   265 EKLKMKEKVDKILAHNCNVFINRQLIYNYPEQLFADAKVMAIEHADFEGIERLALVLGGEIVSTF 329

  Fly   335 TNMDGEESFDASMVGEAAEVAQERICDDELILIKGTKARAAASIILRGPNDFYCDEMERSVHDAL 399
                  :|...:..|....:.:..|.:|.|:...|.|...|.|::|||......||.|||:||||
 Worm   330 ------DSPQTAQFGSCDLIEEIMIGEDRLLRFSGVKLGEACSVVLRGATQQILDESERSLHDAL 388

  Fly   400 CVVKRVLESKKVVAGGGCVEAALSIYLENFATSLASREQLAIAEFAKSLLVIPKTLSVNAAKDAT 464
            ||:...::..|.|||.|..|..:|..:...|..:|.:|.||:..|.::|..:|..:..||..|:.
 Worm   389 CVLVTHVKESKTVAGAGASEILMSSAIAVEAQKVAGKEALAVEAFGRALAQLPTIICDNAGLDSA 453

  Fly   465 DLVAKLRSYHNSSQTKPERSDLKWTGLDLIEGVVRDNKKAGVLEPAMSKIKSLKFATEAAITILR 529
            :||.:||:.|.:.:..        .|:|:.:|.|.|..|.||:|....|:..:..|.||...|||
 Worm   454 ELVTRLRAEHANGRHN--------MGIDIEKGEVADVTKLGVIESYNVKLCMVSSAAEATEQILR 510

  Fly   530 IDDMIKLNPEDKS 542
            :||:||..|..::
 Worm   511 VDDIIKAAPRARA 523

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCT1NP_524450.2 TCP1_alpha 12..538 CDD:239451 181/527 (34%)
cct-2NP_741031.1 chap_CCT_beta 5..522 CDD:274082 182/530 (34%)
TCP1_beta 6..520 CDD:239452 181/528 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0459
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60896
OrthoDB 1 1.010 - - D205390at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.830

Return to query results.
Submit another query.